Huang, A. and Sheland B. and Sivak, D.A. and Thomson, M. (2018). Physically Optimizing Inference. arXiv .
Hendel, Nathan L. and Thomson, Matthew and Marshall, Wallace F. (2018). Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport. Biophysical Journal .
Obernier, Kirsten and Cebrian-Silla, Arantxa and Thomson, Matthew and Parraguez, José Ignacio and Anderson, Rio and Guinto, Cristina and Rodriguez, José Rodas and Garcia-Verdugo, José-Manuel and Alvarez-Buylla, Arturo. (2018). Adult Neurogenesis Is Sustained by Symmetric Self-Renewal and Differentiation. Cell Stem Cell .
Sokolik, C., Liu, Y., Bauer, D., McPherson, J., Broeker, M., Heimberg, G., Qi, S., Sivak, D., and Thomson, M. (2015). Optical modulation of neural differentiation reveals a mechanism for distinguishing fluctuations from developmental cues. Cell Systems .
Cerchiari, A.E., Garbe, J.C., Jee, N.Y., Todhunter, M.E., Broaders, K.E., Peehl, D.M., Desai, T.A., LaBarge, M.A., Thomson, M., and Gartner, Z.J. (2015). A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity. Proc. Natl. Acad. Sci.
Thomson, M., Liu, S.J., Zou, L.-N., Smith, Z., Meissner, A., and Ramanathan, S. (2011). Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell
Thomson, M., and Gunawardena, J. (2009). The rational parameterization theorem for multisite post-translational modification systems. J. Theor. Biol.
Thomson, M., and Gunawardena, J. (2009). Unlimited multistability in multisite phosphorylation systems. Nature
Mallavarapu, A., Thomson, M., Ullian, B., and Gunawardena, J. (2009). Programming with models: modularity and abstraction provide powerful capabilities for systems biology. J R Soc Interface 6.
Ben-Porath, I., Thomson, M.W., Carey, V.J., Ge, R., Bell, G.W., Regev, A., and Weinberg, R.A. (2008). An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nat. Genet.